PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017346.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YC
Protein Properties Length: 245aa    MW: 25940.2 Da    PI: 5.2582
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017346.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.63.7e-53451501101
       NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                 ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+fdflvd
  Do017346.1  45 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVD 143
                 89*****997665555689******************************************************************************** PP

       NF-YC  95 ivprdel 101
                 ivpr+e 
  Do017346.1 144 IVPREEA 150
                 ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.38E-3230141IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.7E-3761132IPR009072Histone-fold
PfamPF008082.8E-2069132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDNQPLPYST GHPPATGGAP VPGVPGAAGP PPVPHHHLLQ QQQAQLQAFW AYQRQEAERA  60
SASDFKNHQL PLARIKKIMK ADEDVRMISA EAPVLFAKAC ELFILELTIR SWLHAEENKR  120
RTLQRNDVAA AIARTDVFDF LVDIVPREEA KEEPGSALGF TAAGAGAVGG GAAPAAGMPY  180
YYPPMGQPAP MTMPAWHVPA WDPAWQQGAA ADVDQSASFG DEGQGFAAGH GGAASFPPPA  240
PPSSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-434614719119HapE
4g92_C4e-434614719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0857200.0BT085720.2 Zea mays full-length cDNA clone ZM_BFc0051B15 mRNA, complete cds.
GenBankEU9572200.0EU957220.1 Zea mays clone 1585988 nuclear transcription factor Y subunit C-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147992.11e-125nuclear transcription factor Y subunit C-1
RefseqXP_008675138.11e-125PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1
SwissprotQ9FMV54e-75NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLB6SWV51e-125B6SWV5_MAIZE; Nuclear transcription factor Y subunit C-1
TrEMBLK0DFD11e-125K0DFD1_MAIZE; CA5P11 CCAAT-HAP5 type transcription factor (Fragment)
STRINGGRMZM2G089812_P011e-124(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-63nuclear factor Y, subunit C4